PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G105000.1
Common NameB456_006G105000, LOC105799142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 310aa    MW: 34772.3 Da    PI: 4.6561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G105000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-08130173755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ErrRR + ++++  Lr+l+P+      +K++K +i   Av Y+++Lq
  Gorai.006G105000.1 130 ILERRRRGQTKEKLYALRSLVPNI-----TKMDKKSIIGDAVLYVQDLQ 173
                         78*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14121189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.738123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.58E-8125175No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14125190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5130173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDASRNSPLE LPDHFEPYDF VEDPDFDQLV NLIQGETEDV VSAFDYDLIN GCFDDKQTGG  60
APGDAFEFDA TSTMVSDFNY VFNALPSFDG EIMKDREEDS GKEDESSGTT TTTSSMATKK  120
SKADRSRTLI LERRRRGQTK EKLYALRSLV PNITKMDKKS IIGDAVLYVQ DLQMQAKKLK  180
AEIAGLEALM AGYQEESINN PVKIRVARNN HPICKKILKL DMFQVEEREF YVRLVCNKSE  240
GVALSLYKAL ESLSNFKVQN SSLATVSDTF ALTFTLNVRD REQSMNLGNM KLWVSGALLN  300
RGFELINCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484997.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
SwissprotQ0V7X41e-91FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D2RTI90.0A0A0D2RTI9_G
STRINGVIT_06s0061g00720.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.19e-71FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]